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100/296: gnu: r-scran: Update to 1.16.0.
From: |
guix-commits |
Subject: |
100/296: gnu: r-scran: Update to 1.16.0. |
Date: |
Fri, 12 Jun 2020 19:29:53 -0400 (EDT) |
rekado pushed a commit to branch master
in repository guix.
commit 47c7670c430b6b3b3a749d6391969badc8da3b52
Author: Ricardo Wurmus <rekado@elephly.net>
AuthorDate: Fri Jun 12 16:38:14 2020 +0200
gnu: r-scran: Update to 1.16.0.
* gnu/packages/bioinformatics.scm (r-scran): Update to 1.16.0.
[propagated-inputs]: Add r-iranges.
[native-inputs]: Add r-knitr.
---
gnu/packages/bioinformatics.scm | 7 +++++--
1 file changed, 5 insertions(+), 2 deletions(-)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index d92b87c..533374b 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -11048,14 +11048,14 @@ quality control.")
(define-public r-scran
(package
(name "r-scran")
- (version "1.14.6")
+ (version "1.16.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "scran" version))
(sha256
(base32
- "1y8wlgk5zbv7c7gcp0ahfpbh9lifab7y3zwf0093fzaw7vr1y6cr"))))
+ "1gm4ys4aq8h1pn45k1rxk384wjyf55izivw8kgxbrflj6j4xvvsv"))))
(build-system r-build-system)
(propagated-inputs
`(("r-beachmat" ,r-beachmat)
@@ -11069,6 +11069,7 @@ quality control.")
("r-dqrng" ,r-dqrng)
("r-edger" ,r-edger)
("r-igraph" ,r-igraph)
+ ("r-iranges" ,r-iranges)
("r-limma" ,r-limma)
("r-matrix" ,r-matrix)
("r-rcpp" ,r-rcpp)
@@ -11077,6 +11078,8 @@ quality control.")
("r-singlecellexperiment" ,r-singlecellexperiment)
("r-statmod" ,r-statmod)
("r-summarizedexperiment" ,r-summarizedexperiment)))
+ (native-inputs
+ `(("r-knitr" ,r-knitr)))
(home-page "https://bioconductor.org/packages/scran")
(synopsis "Methods for single-cell RNA-Seq data analysis")
(description "This package implements a variety of low-level analyses of
- 92/296: gnu: r-sushi: Update to 1.26.0., (continued)
- 92/296: gnu: r-sushi: Update to 1.26.0., guix-commits, 2020/06/12
- 99/296: gnu: r-scater: Update to 1.16.1., guix-commits, 2020/06/12
- 102/296: gnu: r-ideoviz: Update to 1.24.0., guix-commits, 2020/06/12
- 105/296: gnu: r-biocversion: Update to 3.11.1., guix-commits, 2020/06/12
- 107/296: gnu: r-affycomp: Update to 1.64.0., guix-commits, 2020/06/12
- 82/296: gnu: r-organismdbi: Update to 1.30.0., guix-commits, 2020/06/12
- 87/296: gnu: r-erma: Update to 1.4.0., guix-commits, 2020/06/12
- 93/296: gnu: r-fithic: Update to 1.14.0., guix-commits, 2020/06/12
- 95/296: gnu: r-hdf5array: Update to 1.16.0., guix-commits, 2020/06/12
- 98/296: gnu: r-singlecellexperiment: Update to 1.10.1., guix-commits, 2020/06/12
- 100/296: gnu: r-scran: Update to 1.16.0.,
guix-commits <=
- 90/296: gnu: r-gviz: Update to 1.32.0., guix-commits, 2020/06/12
- 91/296: gnu: r-gwascat: Update to 2.20.1., guix-commits, 2020/06/12
- 94/296: gnu: r-hitc: Update to 1.32.0., guix-commits, 2020/06/12
- 96/296: gnu: r-rhdf5lib: Update to 1.10.0., guix-commits, 2020/06/12
- 97/296: gnu: r-beachmat: Update to 2.4.0., guix-commits, 2020/06/12
- 104/296: gnu: r-cummerbund: Update to 2.30.0., guix-commits, 2020/06/12
- 108/296: gnu: r-affycompatible: Update to 1.48.0., guix-commits, 2020/06/12
- 112/296: gnu: r-annotate: Update to 1.66.0., guix-commits, 2020/06/12
- 122/296: gnu: r-graph: Update to 1.66.0., guix-commits, 2020/06/12
- 110/296: gnu: r-affycoretools: Update to 1.60.1., guix-commits, 2020/06/12