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03/13: gnu: r-rgraphviz: Move to (gnu packages bioconductor).
From: |
guix-commits |
Subject: |
03/13: gnu: r-rgraphviz: Move to (gnu packages bioconductor). |
Date: |
Mon, 14 Sep 2020 15:39:49 -0400 (EDT) |
rekado pushed a commit to branch master
in repository guix.
commit b3a998374c37964820a51182fa7be7a546fc4d46
Author: zimoun <zimon.toutoune@gmail.com>
AuthorDate: Mon Sep 14 18:07:38 2020 +0200
gnu: r-rgraphviz: Move to (gnu packages bioconductor).
* gnu/packages/graph.scm (r-rgraphviz): Move from here...
* gnu/packages/bioconductor.scm (r-rgraphviz): ...to here.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
---
gnu/packages/bioconductor.scm | 38 ++++++++++++++++++++++++++++++++++++++
gnu/packages/graph.scm | 38 --------------------------------------
2 files changed, 38 insertions(+), 38 deletions(-)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 1f4ae81..db853bf 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -8308,3 +8308,41 @@ generated.")
"This package provides a library of core pre-processing and normalization
routines.")
(license license:lgpl2.0+)))
+
+(define-public r-rgraphviz
+ (package
+ (name "r-rgraphviz")
+ (version "2.32.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "Rgraphviz" version))
+ (sha256
+ (base32
+ "1calpvzgcz6v7s4x6bf35kj83sga95zjp7x87p5d3qnbv7q2wz5y"))))
+ (properties `((upstream-name . "Rgraphviz")))
+ (build-system r-build-system)
+ (arguments
+ `(#:phases
+ (modify-phases %standard-phases
+ (add-after 'unpack 'make-reproducible
+ (lambda _
+ ;; The replacement value is taken from src/graphviz/builddate.h
+ (substitute* "src/graphviz/configure"
+ (("VERSION_DATE=.*")
+ "VERSION_DATE=20200427.2341\n"))
+ #t)))))
+ ;; FIXME: Rgraphviz bundles the sources of an older variant of
+ ;; graphviz. It does not build with the latest version of graphviz, so
+ ;; we do not add graphviz to the inputs.
+ (inputs `(("zlib" ,zlib)))
+ (propagated-inputs
+ `(("r-graph" ,r-graph)))
+ (native-inputs
+ `(("pkg-config" ,pkg-config)))
+ (home-page "https://bioconductor.org/packages/Rgraphviz")
+ (synopsis "Plotting capabilities for R graph objects")
+ (description
+ "This package interfaces R with the graphviz library for plotting R graph
+objects from the @code{graph} package.")
+ (license license:epl1.0)))
diff --git a/gnu/packages/graph.scm b/gnu/packages/graph.scm
index ccffccb..db390fe 100644
--- a/gnu/packages/graph.scm
+++ b/gnu/packages/graph.scm
@@ -121,44 +121,6 @@ more.")
(home-page "https://pypi.org/project/python-igraph/")
(synopsis "Python bindings for the igraph network analysis library")))
-(define-public r-rgraphviz
- (package
- (name "r-rgraphviz")
- (version "2.32.0")
- (source
- (origin
- (method url-fetch)
- (uri (bioconductor-uri "Rgraphviz" version))
- (sha256
- (base32
- "1calpvzgcz6v7s4x6bf35kj83sga95zjp7x87p5d3qnbv7q2wz5y"))))
- (properties `((upstream-name . "Rgraphviz")))
- (build-system r-build-system)
- (arguments
- `(#:phases
- (modify-phases %standard-phases
- (add-after 'unpack 'make-reproducible
- (lambda _
- ;; The replacement value is taken from src/graphviz/builddate.h
- (substitute* "src/graphviz/configure"
- (("VERSION_DATE=.*")
- "VERSION_DATE=20200427.2341\n"))
- #t)))))
- ;; FIXME: Rgraphviz bundles the sources of an older variant of
- ;; graphviz. It does not build with the latest version of graphviz, so
- ;; we do not add graphviz to the inputs.
- (inputs `(("zlib" ,zlib)))
- (propagated-inputs
- `(("r-graph" ,r-graph)))
- (native-inputs
- `(("pkg-config" ,pkg-config)))
- (home-page "https://bioconductor.org/packages/Rgraphviz")
- (synopsis "Plotting capabilities for R graph objects")
- (description
- "This package interfaces R with the graphviz library for plotting R graph
-objects from the @code{graph} package.")
- (license license:epl1.0)))
-
(define-public r-rbiofabric
(let ((commit "666c2ae8b0a537c006592d067fac6285f71890ac")
(revision "1"))
- branch master updated (62881be -> 3159fcf), guix-commits, 2020/09/14
- 01/13: gnu: r-fourcseq: Move to (gnu packages bioconductor)., guix-commits, 2020/09/14
- 02/13: gnu: r-preprocesscore: Move to (gnu packages bioconductor)., guix-commits, 2020/09/14
- 03/13: gnu: r-rgraphviz: Move to (gnu packages bioconductor).,
guix-commits <=
- 04/13: gnu: r-delayedmatrixstats: Move to (gnu packages bioconductor)., guix-commits, 2020/09/14
- 05/13: gnu: r-scran: Move to (gnu packages bioconductor)., guix-commits, 2020/09/14
- 06/13: gnu: r-scater: Move to (gnu packages bioconductor)., guix-commits, 2020/09/14
- 09/13: gnu: r-rhdf5lib: Move to (gnu packages bioconductor)., guix-commits, 2020/09/14
- 07/13: gnu: r-singlecellexperiment: Move to (gnu packages bioconductor)., guix-commits, 2020/09/14
- 08/13: gnu: r-beachmat: Move to (gnu packages bioconductor)., guix-commits, 2020/09/14
- 11/13: gnu: r-hitc: Move to (gnu packages bioconductor)., guix-commits, 2020/09/14
- 12/13: gnu: r-fithic: Move to (gnu packages bioconductor)., guix-commits, 2020/09/14
- 10/13: gnu: r-hdf5array: Move to (gnu packages bioconductor)., guix-commits, 2020/09/14
- 13/13: gnu: r-wgcna: Move to (gnu packages bioconductor)., guix-commits, 2020/09/14