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08/13: gnu: r-beachmat: Move to (gnu packages bioconductor).
From: |
guix-commits |
Subject: |
08/13: gnu: r-beachmat: Move to (gnu packages bioconductor). |
Date: |
Mon, 14 Sep 2020 15:39:51 -0400 (EDT) |
rekado pushed a commit to branch master
in repository guix.
commit 8863c14cd856d917552017646dbf4a36654e9515
Author: zimoun <zimon.toutoune@gmail.com>
AuthorDate: Mon Sep 14 18:07:43 2020 +0200
gnu: r-beachmat: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-beachmat): Move from here...
* gnu/packages/bioconductor.scm (r-beachmat): ...to here.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
---
gnu/packages/bioconductor.scm | 25 +++++++++++++++++++++++++
gnu/packages/bioinformatics.scm | 25 -------------------------
2 files changed, 25 insertions(+), 25 deletions(-)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index fbdb7ee..2796f4f 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -8347,6 +8347,31 @@ routines.")
objects from the @code{graph} package.")
(license license:epl1.0)))
+(define-public r-beachmat
+ (package
+ (name "r-beachmat")
+ (version "2.4.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "beachmat" version))
+ (sha256
+ (base32
+ "1vl6jbf9ia78cm4ikdb8vz04jv4b46zhvg5i006c63a9pzw7zhxi"))))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-biocgenerics" ,r-biocgenerics)
+ ("r-delayedarray" ,r-delayedarray)
+ ("r-matrix" ,r-matrix)))
+ (native-inputs
+ `(("r-knitr" ,r-knitr)))
+ (home-page "https://bioconductor.org/packages/beachmat")
+ (synopsis "Compiling Bioconductor to handle each matrix type")
+ (description "This package provides a consistent C++ class interface for a
+variety of commonly used matrix types, including sparse and HDF5-backed
+matrices.")
+ (license license:gpl3)))
+
(define-public r-singlecellexperiment
(package
(name "r-singlecellexperiment")
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index ef6d6fc..a84d197 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -10766,31 +10766,6 @@ block processing.")
packages.")
(license license:artistic2.0)))
-(define-public r-beachmat
- (package
- (name "r-beachmat")
- (version "2.4.0")
- (source
- (origin
- (method url-fetch)
- (uri (bioconductor-uri "beachmat" version))
- (sha256
- (base32
- "1vl6jbf9ia78cm4ikdb8vz04jv4b46zhvg5i006c63a9pzw7zhxi"))))
- (build-system r-build-system)
- (propagated-inputs
- `(("r-biocgenerics" ,r-biocgenerics)
- ("r-delayedarray" ,r-delayedarray)
- ("r-matrix" ,r-matrix)))
- (native-inputs
- `(("r-knitr" ,r-knitr)))
- (home-page "https://bioconductor.org/packages/beachmat")
- (synopsis "Compiling Bioconductor to handle each matrix type")
- (description "This package provides a consistent C++ class interface for a
-variety of commonly used matrix types, including sparse and HDF5-backed
-matrices.")
- (license license:gpl3)))
-
(define-public r-dropbead
(let ((commit "d746c6f3b32110428ea56d6a0001ce52a251c247")
(revision "2"))
- branch master updated (62881be -> 3159fcf), guix-commits, 2020/09/14
- 01/13: gnu: r-fourcseq: Move to (gnu packages bioconductor)., guix-commits, 2020/09/14
- 02/13: gnu: r-preprocesscore: Move to (gnu packages bioconductor)., guix-commits, 2020/09/14
- 03/13: gnu: r-rgraphviz: Move to (gnu packages bioconductor)., guix-commits, 2020/09/14
- 04/13: gnu: r-delayedmatrixstats: Move to (gnu packages bioconductor)., guix-commits, 2020/09/14
- 05/13: gnu: r-scran: Move to (gnu packages bioconductor)., guix-commits, 2020/09/14
- 06/13: gnu: r-scater: Move to (gnu packages bioconductor)., guix-commits, 2020/09/14
- 09/13: gnu: r-rhdf5lib: Move to (gnu packages bioconductor)., guix-commits, 2020/09/14
- 07/13: gnu: r-singlecellexperiment: Move to (gnu packages bioconductor)., guix-commits, 2020/09/14
- 08/13: gnu: r-beachmat: Move to (gnu packages bioconductor).,
guix-commits <=
- 11/13: gnu: r-hitc: Move to (gnu packages bioconductor)., guix-commits, 2020/09/14
- 12/13: gnu: r-fithic: Move to (gnu packages bioconductor)., guix-commits, 2020/09/14
- 10/13: gnu: r-hdf5array: Move to (gnu packages bioconductor)., guix-commits, 2020/09/14
- 13/13: gnu: r-wgcna: Move to (gnu packages bioconductor)., guix-commits, 2020/09/14