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05/19: gnu: bowtie: Remove reference to %outputs.
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guix-commits |
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Subject: |
05/19: gnu: bowtie: Remove reference to %outputs. |
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Date: |
Fri, 3 Dec 2021 18:33:45 -0500 (EST) |
rekado pushed a commit to branch core-updates-frozen
in repository guix.
commit a47a90b900f5971f2c100c4ec8ba63a82262328d
Author: Ricardo Wurmus <rekado@elephly.net>
AuthorDate: Fri Dec 3 23:52:43 2021 +0100
gnu: bowtie: Remove reference to %outputs.
* gnu/packages/bioinformatics.scm (bowtie)[arguments]: Replace reference to
%outputs with a gexp.
---
gnu/packages/bioinformatics.scm | 8 ++++----
1 file changed, 4 insertions(+), 4 deletions(-)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 47d958f..710195d 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -1995,10 +1995,10 @@ errors at the end of reads.")
(("-DBUILD_TIME=.*") "-DBUILD_TIME=\"\\\"0\\\"\""))))))
(build-system gnu-build-system)
(arguments
- '(#:make-flags
- (list "allall"
- "WITH_TBB=1"
- (string-append "prefix=" (assoc-ref %outputs "out")))
+ `(#:make-flags
+ ,#~(list "allall"
+ "WITH_TBB=1"
+ (string-append "prefix=" #$output))
#:phases
(modify-phases %standard-phases
(replace 'configure
- branch core-updates-frozen updated (6d4f260 -> 114eb98), guix-commits, 2021/12/03
- 01/19: gnu: qtltools: Replace references to %build-inputs., guix-commits, 2021/12/03
- 02/19: gnu: bedtools: Remove reference to %outputs., guix-commits, 2021/12/03
- 03/19: gnu: bless: Remove trailing #T from snippet and build phases., guix-commits, 2021/12/03
- 04/19: gnu: bless: Remove reference to %build-inputs., guix-commits, 2021/12/03
- 05/19: gnu: bowtie: Remove reference to %outputs.,
guix-commits <=
- 06/19: gnu: bowtie1: Replace reference to %outputs., guix-commits, 2021/12/03
- 07/19: gnu: cd-hit: Replace reference to %outputs., guix-commits, 2021/12/03
- 10/19: gnu: fxtract: Replace reference to %outputs., guix-commits, 2021/12/03
- 12/19: gnu: java-picard: Replace reference to %build-inputs., guix-commits, 2021/12/03
- 13/19: gnu: fastp: Replace reference to %outputs., guix-commits, 2021/12/03
- 14/19: gnu: jellyfish: Replace reference to %outputs., guix-commits, 2021/12/03
- 18/19: gnu: mash: Move htslib and capnproto to regular inputs., guix-commits, 2021/12/03
- 19/19: gnu: mash: Replace references to %build-inputs., guix-commits, 2021/12/03
- 15/19: gnu: mafft: Replace references to %build-inputs and %outputs., guix-commits, 2021/12/03
- 16/19: gnu: mafft: Remove trailing #T., guix-commits, 2021/12/03