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14/19: gnu: jellyfish: Replace reference to %outputs.
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guix-commits |
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Subject: |
14/19: gnu: jellyfish: Replace reference to %outputs. |
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Date: |
Fri, 3 Dec 2021 18:33:49 -0500 (EST) |
rekado pushed a commit to branch core-updates-frozen
in repository guix.
commit 5cb2920b8dc61648eb8e61dadd2ee0b38ee93915
Author: Ricardo Wurmus <rekado@elephly.net>
AuthorDate: Sat Dec 4 00:19:08 2021 +0100
gnu: jellyfish: Replace reference to %outputs.
* gnu/packages/bioinformatics.scm (jellyfish)[arguments]: Use a gexp.
---
gnu/packages/bioinformatics.scm | 5 ++---
1 file changed, 2 insertions(+), 3 deletions(-)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 52d8d80..9d8a33d 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -5014,9 +5014,8 @@ experiments and provide highly stable thresholds based on
reproducibility.")
"python")) ;for Python bindings
(arguments
`(#:configure-flags
- (list "--without-sse" ; configure script probes for CPU features when
SSE is enabled.
- (string-append "--enable-python-binding="
- (assoc-ref %outputs "python")))
+ ,#~(list "--without-sse" ; configure script probes for CPU features
when SSE is enabled.
+ (string-append "--enable-python-binding=" #$output:python))
#:phases
(modify-phases %standard-phases
(add-before 'check 'set-SHELL-variable
- 01/19: gnu: qtltools: Replace references to %build-inputs., (continued)
- 01/19: gnu: qtltools: Replace references to %build-inputs., guix-commits, 2021/12/03
- 02/19: gnu: bedtools: Remove reference to %outputs., guix-commits, 2021/12/03
- 03/19: gnu: bless: Remove trailing #T from snippet and build phases., guix-commits, 2021/12/03
- 04/19: gnu: bless: Remove reference to %build-inputs., guix-commits, 2021/12/03
- 05/19: gnu: bowtie: Remove reference to %outputs., guix-commits, 2021/12/03
- 06/19: gnu: bowtie1: Replace reference to %outputs., guix-commits, 2021/12/03
- 07/19: gnu: cd-hit: Replace reference to %outputs., guix-commits, 2021/12/03
- 10/19: gnu: fxtract: Replace reference to %outputs., guix-commits, 2021/12/03
- 12/19: gnu: java-picard: Replace reference to %build-inputs., guix-commits, 2021/12/03
- 13/19: gnu: fastp: Replace reference to %outputs., guix-commits, 2021/12/03
- 14/19: gnu: jellyfish: Replace reference to %outputs.,
guix-commits <=
- 18/19: gnu: mash: Move htslib and capnproto to regular inputs., guix-commits, 2021/12/03
- 19/19: gnu: mash: Replace references to %build-inputs., guix-commits, 2021/12/03
- 15/19: gnu: mafft: Replace references to %build-inputs and %outputs., guix-commits, 2021/12/03
- 16/19: gnu: mafft: Remove trailing #T., guix-commits, 2021/12/03
- 17/19: gnu: mash: Simplify snippet., guix-commits, 2021/12/03
- 09/19: gnu: delly: Replace reference to %outputs., guix-commits, 2021/12/03
- 11/19: gnu: java-htsjdk: Replace reference to %outputs., guix-commits, 2021/12/03
- 08/19: gnu: libbigwig: Replace reference to %outputs., guix-commits, 2021/12/03