branch master updated (7382aa0 -> 8f12002)

[guix-commits]

rekado pushed a change to branch master
in repository guix.

    from 7382aa0  gnu: python-scanpy: Update to 1.7.2.
     new f98837a  gnu: pigx-rnaseq: Update to 0.0.13.
     new c343c3b  guix: Update to Bioconductor 3.13.
     new d5c08f1  gnu: Add r-aplot.
     new 41ea9be  gnu: Add r-ggnewscale.
     new b71f213  gnu: Add r-ggpointdensity.
     new ab66c9a  gnu: Add r-arrow.
     new ce99b4d  gnu: Add r-restfulr.
     new efefb2b  gnu: Add r-trajectoryutils.
     new fd4fa40  gnu: Add r-scaledmatrix.
     new ab4a91b  gnu: Add r-treeio.
     new 8caab75  gnu: Add r-ggtree.
     new 53ec977  gnu: Add r-metapod.
     new 1b0338d  gnu: r-rhdf5lib: Update to 1.14.0.
     new d0a7dc0  gnu: r-bioccheck: Update to 1.28.0.
     new 5d13aab  gnu: r-msnid: Update to 1.26.0.
     new 87d06a7  gnu: r-mzr: Update to 2.26.0.
     new 782d27f  gnu: r-rhdf5: Update to 2.36.0.
     new 5c37a04  gnu: r-cytolib: Update to 2.4.0.
     new b9751b6  gnu: r-ncdfflow: Update to 2.38.0.
     new 764e2db  gnu: r-flowworkspace: Update to 4.4.0.
     new bfa23ec  gnu: r-cytoml: Update to 2.4.0.
     new 7581795  gnu: r-hdf5array: Update to 1.20.0.
     new 405b386  gnu: r-aneufinder: Update to 1.20.0.
     new b05761a  gnu: r-biocversion: Update to 3.13.1.
     new 7bac473  gnu: r-biocgenerics: Update to 0.38.0.
     new e6c5d8c  gnu: r-coverageview: Update to 1.30.0.
     new 116df58  gnu: r-cummerbund: Update to 2.34.0.
     new dec096f  gnu: r-decipher: Update to 2.20.0.
     new f0f839c  gnu: r-deepsnv: Update to 1.38.0.
     new 8eb0c71  gnu: r-delayedarray: Update to 0.18.0.
     new 4075ac7  gnu: r-bluster: Update to 1.2.1.
     new cfd4c05  gnu: r-ideoviz: Update to 1.28.0.
     new 60b9546  gnu: r-iranges: Update to 2.26.0.
     new af04e2c  gnu: r-affy: Update to 1.70.0.
     new b045bf2  gnu: r-affycomp: Update to 1.68.0.
     new bd17bef  gnu: r-affycompatible: Update to 1.52.0.
     new 3abb0b6  gnu: r-affycontam: Update to 1.50.0.
     new a908316  gnu: r-affycoretools: Update to 1.64.0.
     new dfeb135  gnu: r-affyio: Update to 1.62.0.
     new 308067c  gnu: r-affxparser: Update to 1.64.0.
     new 1bb8775  gnu: r-annotate: Update to 1.70.0.
     new c7811ed  gnu: r-annotationdbi: Update to 1.54.0.
     new 361f2f6  gnu: r-annotationfilter: Update to 1.16.0.
     new 4d13cf0  gnu: r-annotationforge: Update to 1.34.0.
     new 2071ed5  gnu: r-annotationhub: Update to 3.0.0.
     new 3e29076  gnu: r-aroma-light: Update to 3.22.0.
     new baaed6f  gnu: r-bamsignals: Update to 1.24.0.
     new 8be5d4f  gnu: r-biobase: Update to 2.52.0.
     new f9ae0a4  gnu: r-biomart: Update to 2.48.0.
     new 3eedef8  gnu: r-biocparallel: Update to 1.26.0.
     new 16fe6ab  gnu: r-biostrings: Update to 2.60.0.
     new 98f3c55  gnu: r-biovizbase: Update to 1.40.0.
     new e039d07  gnu: r-bsgenome: Update to 1.60.0.
     new 336107c  gnu: r-category: Update to 2.58.0.
     new ca10baf  gnu: r-chipseeker: Update to 1.28.3.
     new d296ac9  gnu: r-chipseq: Update to 1.42.0.
     new a8cfce4  gnu: r-complexheatmap: Update to 2.8.0.
     new 2835e7c  gnu: r-copywriter: Update to 2.24.0.
     new 45225c6  gnu: r-deseq2: Update to 1.32.0.
     new e9445cd  gnu: r-dexseq: Update to 1.38.0.
     new 30ce1f9  gnu: r-dirichletmultinomial: Update to 1.34.0.
     new f998c95  gnu: r-edaseq: Update to 2.26.0.
     new bdc1b90  gnu: r-edger: Update to 3.34.0.
     new 6abbb53  gnu: r-ensembldb: Update to 2.16.0.
     new ff59b34  gnu: r-fastseg: Update to 1.38.0.
     new f22f4ca  gnu: r-gage: Update to 2.42.0.
     new 389ce4e  gnu: r-genefilter: Update to 1.74.0.
     new 3c024e9  gnu: r-geneoverlap: Update to 1.28.0.
     new ef7bbc4  gnu: r-genomation: Update to 1.24.0.
     new f88ab81  gnu: r-genomeinfodb: Update to 1.28.0.
     new 570e80d  gnu: r-genomicalignments: Update to 1.28.0.
     new 62889b9  gnu: r-genomicfeatures: Update to 1.44.0.
     new d491b7e  gnu: r-genomicfiles: Update to 1.28.0.
     new 1b44202  gnu: r-genomicranges: Update to 1.44.0.
     new 214e784  gnu: r-gostats: Update to 2.58.0.
     new 330a7fe  gnu: r-gseabase: Update to 1.54.0.
     new 78eb1fd  gnu: r-hpar: Update to 1.34.0.
     new 76fc8a5  gnu: r-rhtslib: Update to 1.24.0.
     new 94b4e64  gnu: r-impute: Update to 1.66.0.
     new 2cbb8e1  gnu: r-interactivedisplaybase: Update to 1.30.0.
     new 60b598e  gnu: r-keggrest: Update to 1.32.0.
     new 595b75e  gnu: r-limma: Update to 3.48.0.
     new 0b3fd7e  gnu: r-methylkit: Update to 1.18.0.
     new c966cef  gnu: r-mutationalpatterns: Update to 3.2.0.
     new d647eb0  gnu: r-msnbase: Update to 2.18.0.
     new 00b2174  gnu: r-mzid: Update to 1.30.0.
     new 5d37cee  gnu: r-organismdbi: Update to 1.34.0.
     new 0ec6177  gnu: r-pcamethods: Update to 1.84.0.
     new dc67525  gnu: r-protgenerics: Update to 1.24.0.
     new 7c45bc9  gnu: r-rbgl: Update to 1.68.0.
     new 38fa99c  gnu: r-rcas: Update to 1.18.0.
     new 2da4ee4  gnu: r-regioner: Update to 1.24.0.
     new 51bee5c  gnu: r-reportingtools: Update to 2.32.0.
     new f2f4ca7  gnu: r-rhdf5filters: Update to 1.4.0.
     new e22d743  gnu: r-rsamtools: Update to 2.8.0.
     new 5ce21e7  gnu: r-rtracklayer: Update to 1.52.0.
     new 58ae27d  gnu: r-seqlogo: Update to 1.58.0.
     new 76edc5a  gnu: r-seqpattern: Update to 1.24.0.
     new 15f371c  gnu: r-shortread: Update to 1.50.0.
     new 8e0dac0  gnu: r-slingshot: Update to 2.0.0.
     new 8c0f2d9  gnu: r-structuralvariantannotation: Update to 1.8.0.
     new 6eaa922  gnu: r-summarizedexperiment: Update to 1.22.0.
     new 81c55df  gnu: r-sva: Update to 3.40.0.
     new 7728c59  gnu: r-systempiper: Update to 1.26.2.
     new ad6ba3d  gnu: r-topgo: Update to 2.44.0.
     new 2817a8f  gnu: r-tximport: Update to 1.20.0.
     new c73b9d6  gnu: r-variantannotation: Update to 1.38.0.
     new e4a34df  gnu: r-vsn: Update to 3.60.0.
     new 092d2a8  gnu: r-xvector: Update to 0.32.0.
     new 473371d  gnu: r-zlibbioc: Update to 1.38.0.
     new c686077  gnu: r-geneplotter: Update to 1.70.0.
     new 2c9c656  gnu: r-oligoclasses: Update to 1.54.0.
     new 359c350  gnu: r-oligo: Update to 1.56.0.
     new 371149d  gnu: r-qvalue: Update to 2.24.0.
     new 941a868  gnu: r-apeglm: Update to 1.14.0.
     new 737a228  gnu: r-greylistchip: Update to 1.24.0.
     new 27abca9  gnu: r-diffbind: Update to 3.2.1.
     new ff7a86f  gnu: r-mbkmeans: Update to 1.8.0.
     new bed64f7  gnu: r-multtest: Update to 2.48.0.
     new fceca5c  gnu: r-graph: Update to 1.70.0.
     new 5386054  gnu: r-chippeakanno: Update to 3.26.0.
     new 202202c  gnu: r-matrixgenerics: Update to 1.4.0.
     new 0045d21  gnu: r-marray: Update to 1.70.0.
     new 09c90d8  gnu: r-cghbase: Update to 1.52.0.
     new 1c3e239  gnu: r-cghcall: Update to 2.54.0.
     new 11c7a04  gnu: r-qdnaseq: Update to 1.28.0.
     new 38f2e39  gnu: r-bayseq: Update to 2.26.0.
     new afc59d2  gnu: r-chipcomp: Update to 1.22.0.
     new 0443b3c  gnu: r-riboprofiling: Update to 1.22.0.
     new 43a0a48  gnu: r-riboseqr: Update to 1.26.0.
     new ba7757c  gnu: r-interactionset: Update to 1.20.0.
     new 675f1a9  gnu: r-genomicinteractions: Update to 1.26.0.
     new 87d6e68  gnu: r-ctc: Update to 1.66.0.
     new 4485bc7  gnu: r-goseq: Update to 1.44.0.
     new 089f646  gnu: r-glimma: Update to 2.2.0.
     new 481c322  gnu: r-rots: Update to 1.20.0.
     new 79c1e03  gnu: r-plgem: Update to 1.64.0.
     new c6078d9  gnu: r-inspect: Update to 1.22.0.
     new cac2839  gnu: r-dnabarcodes: Update to 1.22.0.
     new 618f98c  gnu: r-ruvseq: Update to 1.26.0.
     new f5ae148  gnu: r-biocneighbors: Update to 1.10.0.
     new 8aef574  gnu: r-biocsingular: Update to 1.8.0.
     new a10f236  gnu: r-savr: Update to 1.30.0.
     new 749cf40  gnu: r-chipexoqual: Update to 1.16.0.
     new ac27fee  gnu: r-copynumber: Update to 1.32.0.
     new 729f6ad  gnu: r-dnacopy: Update to 1.66.0.
     new 9a67123  gnu: r-ebseq: Update to 1.32.0.
     new c63c441  gnu: r-karyoploter: Update to 1.18.0.
     new 0c15284  gnu: r-lpsymphony: Update to 1.20.0.
     new 2ed5a08  gnu: r-ihw: Update to 1.20.0.
     new 79928c5  gnu: r-icobra: Update to 1.20.0.
     new 12ec22c  gnu: r-mast: Update to 1.18.0.
     new 716ac28  gnu: r-monocle: Update to 2.20.0.
     new d7390d7  gnu: r-noiseq: Update to 2.36.0.
     new 6110243  gnu: r-scdd: Update to 1.16.0.
     new 6db7802  gnu: r-scone: Update to 1.16.0.
     new 23d3d7a  gnu: r-geoquery: Update to 2.60.0.
     new 7e29fb9  gnu: r-illuminaio: Update to 0.34.0.
     new 18c81e5  gnu: r-siggenes: Update to 1.66.0.
     new 136adea  gnu: r-bumphunter: Update to 1.34.0.
     new a387e1d  gnu: r-minfi: Update to 1.38.0.
     new 973d334  gnu: r-methylumi: Update to 2.38.0.
     new f1635d6  gnu: r-lumi: Update to 2.44.0.
     new ac150da  gnu: r-linnorm: Update to 2.16.0.
     new 0c35cde  gnu: r-ioniser: Update to 2.16.0.
     new 2c5bba1  gnu: r-tradeseq: Update to 1.6.0.
     new 1ade726  gnu: r-varianttools: Update to 1.34.0.
     new faf6016  gnu: r-heatplus: Update to 3.0.0.
     new 376d9dd  gnu: r-gosemsim: Update to 2.18.0.
     new dda2915  gnu: r-anota: Update to 1.40.0.
     new 1bfe5c2  gnu: r-sigpathway: Update to 1.60.0.
     new c8bec0d  gnu: r-fgsea: Update to 1.18.0.
     new ca136dd  gnu: r-dose: Update to 3.18.0.
     new 8b0dc8e  gnu: r-enrichplot: Update to 1.12.0.
     new 2b4c784  gnu: r-clusterprofiler: Update to 4.0.0.
     new 2a7532c  gnu: r-clusterexperiment: Update to 2.12.0.
     new ad3b03d  gnu: r-mlinterfaces: Update to 1.72.0.
     new 387c023  gnu: r-annaffy: Update to 1.63.1.
     new 2aad8aa  gnu: r-a4core: Update to 1.40.0.
     new 319d9dc  gnu: r-a4classif: Update to 1.40.0.
     new 751b490  gnu: r-a4preproc: Update to 1.40.0.
     new 1217dab  gnu: r-a4reporting: Update to 1.40.0.
     new 76fb2de  gnu: r-a4base: Update to 1.40.0.
     new 822024e  gnu: r-a4: Update to 1.40.0.
     new 33bf7b5  gnu: r-abseqr: Update to 1.10.0.
     new 2ace8e3  gnu: r-bacon: Update to 1.20.0.
     new f16dcdc  gnu: r-rgadem: Update to 2.40.0.
     new b532b80  gnu: r-motifdb: Update to 1.34.0.
     new 1390f42  gnu: r-motifbreakr: Update to 2.6.0.
     new 6e762d2  gnu: r-motifstack: Update to 1.36.0.
     new 4627fef  gnu: r-genomicscores: Update to 2.4.0.
     new 2357a73  gnu: r-atacseqqc: Update to 1.16.0.
     new b7f6999  gnu: r-gofuncr: Update to 1.12.0.
     new 77a1c4a  gnu: r-abaenrichment: Update to 1.22.0.
     new 0cef014  gnu: r-annotationtools: Update to 1.66.0.
     new 51e7e01  gnu: r-allelicimbalance: Update to 1.30.0.
     new 7238b33  gnu: r-aucell: Update to 1.14.0.
     new 3e1c585  gnu: r-ebimage: Update to 4.34.0.
     new 9866a9b  gnu: r-yamss: Update to 1.18.0.
     new 7946911  gnu: r-gtrellis: Update to 1.24.0.
     new 774e916  gnu: r-somaticsignatures: Update to 2.28.0.
     new 995c438  gnu: r-yapsa: Update to 1.18.0.
     new a72006c  gnu: r-gcrma: Update to 2.64.0.
     new 8d6a721  gnu: r-quantro: Update to 1.26.0.
     new 4a9e3d2  gnu: r-yarn: Update to 1.18.0.
     new 48737e9  gnu: r-roar: Update to 1.28.0.
     new ef30a43  gnu: r-massspecwavelet: Update to 1.58.0.
     new d463b40  gnu: r-xcms: Update to 3.14.0.
     new 2da5ef4  gnu: r-wrench: Update to 1.10.0.
     new e91b408  gnu: r-wiggleplotr: Update to 1.16.0.
     new 3a7ad7f  gnu: r-widgettools: Update to 1.70.0.
     new 34137c2  gnu: r-webbioc: Update to 1.64.0.
     new fc400d1  gnu: r-zinbwave: Update to 1.14.1.
     new 6145252  gnu: r-zfpkm: Update to 1.14.0.
     new 25ba2d3  gnu: r-rbowtie2: Update to 1.14.0.
     new 7cf4911  gnu: r-progeny: Update to 1.14.0.
     new 1dce605  gnu: r-arrmnormalization: Update to 1.32.0.
     new 46fc033  gnu: r-biocfilecache: Update to 2.0.0.
     new 6929565  gnu: r-iclusterplus: Update to 1.28.0.
     new 0e74fff  gnu: r-rbowtie: Update to 1.32.0.
     new eca0820  gnu: r-sgseq: Update to 1.26.0.
     new 274b1e2  gnu: r-rhisat2: Update to 1.8.0.
     new f039c22  gnu: r-quasr: Update to 1.32.0.
     new ec78a01  gnu: r-rqc: Update to 1.26.0.
     new f9c306e  gnu: r-birewire: Update to 3.24.0.
     new 3d9b638  gnu: r-multidataset: Update to 1.20.0.
     new 3501292  gnu: r-ropls: Update to 1.24.0.
     new 28472b6  gnu: r-biosigner: Update to 1.20.0.
     new 758c1cd  gnu: r-annotatr: Update to 1.18.0.
     new db56495  gnu: r-rsubread: Update to 2.6.1.
     new 6a7589d  gnu: r-flowutils: Update to 1.56.0.
     new 4299d97  gnu: r-consensusclusterplus: Update to 1.56.0.
     new 19855b5  gnu: r-flowcore: Update to 2.4.0.
     new 5e49dfd  gnu: r-flowmeans: Update to 1.52.0.
     new 417b410  gnu: r-ggcyto: Update to 1.20.0.
     new 57a41cd  gnu: r-flowviz: Update to 1.56.0.
     new c474b47  gnu: r-flowclust: Update to 3.30.0.
     new a1557ad  gnu: r-rprotobuflib: Update to 2.4.0.
     new 6489371  gnu: r-flowstats: Update to 4.4.0.
     new 53c0417  gnu: r-opencyto: Update to 2.4.0.
     new 9ed2ec5  gnu: r-flowsom: Update to 2.0.0.
     new 480dcf3  gnu: r-mixomics: Update to 6.16.0.
     new 9c0b691  gnu: r-depecher: Update to 1.8.0.
     new f9049ad  gnu: r-rcistarget: Update to 1.12.0.
     new cec7972  gnu: r-cicero: Update to 1.10.0.
     new d37ae38  gnu: r-circrnaprofiler: Update to 1.6.0.
     new bb3ef48  gnu: r-genie3: Update to 1.14.0.
     new 125ffdf  gnu: r-roc: Update to 1.68.0.
     new d0c3644  gnu: r-watermelon: Update to 1.36.0.
     new 0cc4deb  gnu: r-gdsfmt: Update to 1.28.0.
     new 988337d  gnu: r-bigmelon: Update to 1.18.0.
     new 0615d39  gnu: r-seqbias: Update to 1.40.0.
     new 66e45a9  gnu: r-reqon: Update to 1.38.0.
     new 99496a1  gnu: r-wavcluster: Update to 2.26.0.
     new 7a287bc  gnu: r-timeseriesexperiment: Update to 1.10.0.
     new 27e0600  gnu: r-variantfiltering: Update to 1.28.0.
     new 2ca9f4f  gnu: r-variancepartition: Update to 1.22.0.
     new 58f2abf  gnu: r-htqpcr: Update to 1.46.0.
     new 56ec3a6  gnu: r-unifiedwmwqpcr: Update to 1.28.0.
     new e4087ae  gnu: r-universalmotif: Update to 1.10.1.
     new 51d637a  gnu: r-bgmix: Update to 1.52.0.
     new bacd432  gnu: r-bgx: Update to 1.58.0.
     new 3c64554  gnu: r-bhc: Update to 1.44.0.
     new 49403e8  gnu: r-bicare: Update to 1.50.0.
     new 58b8ed9  gnu: r-bifet: Update to 1.12.0.
     new 92f5efa  gnu: r-rsbml: Update to 2.50.0.
     new d518858  gnu: r-hypergraph: Update to 1.64.0.
     new 302929d  gnu: r-hyperdraw: Update to 1.44.0.
     new 90eb7ae  gnu: r-biggr: Update to 1.28.0.
     new 8a8f200  gnu: r-bigpint: Update to 1.8.0.
     new 02ec364  gnu: r-chemminer: Update to 3.44.0.
     new 7c990fb  gnu: r-bioassayr: Update to 1.30.0.
     new dc28787  gnu: r-biobroom: Update to 1.24.0.
     new a95a14c  gnu: r-graphite: Update to 1.38.0.
     new f218b9b  gnu: r-reactomepa: Update to 1.36.0.
     new 834a6db  gnu: r-ebarrays: Update to 2.56.0.
     new cd9af23  gnu: r-biocgraph: Update to 1.54.0.
     new 6513592  gnu: r-biocstyle: Update to 2.20.0.
     new 1e2c0e8  gnu: r-biocviews: Update to 1.60.0.
     new 28613e1  gnu: r-experimenthub: Update to 2.0.0.
     new 37f824c  gnu: r-grohmm: Update to 1.26.0.
     new e7b465e  gnu: r-multiassayexperiment: Update to 1.18.0.
     new 4faded2  gnu: r-bioconcotk: Update to 1.12.0.
     new 2023951  gnu: r-biocor: Update to 1.16.0.
     new e9e4f65  gnu: r-biocpkgtools: Update to 1.10.1.
     new e828fa2  gnu: r-biocset: Update to 1.6.0.
     new 36f51f8  gnu: r-biocworkflowtools: Update to 1.18.0.
     new db46064  gnu: r-biodist: Update to 1.64.0.
     new 5d611d3  gnu: r-pcatools: Update to 2.4.0.
     new 06dd2fd  gnu: r-rgreat: Update to 1.24.0.
     new 3b19239  gnu: r-m3c: Update to 1.14.0.
     new a9f203b  gnu: r-icens: Update to 1.64.0.
     new a78daaa  gnu: r-preprocesscore: Update to 1.54.0.
     new 5565b8b  gnu: r-s4vectors: Update to 0.30.0.
     new 64b03c6  gnu: r-rgraphviz: Update to 2.36.0.
     new 914bd41  gnu: r-fithic: Update to 1.18.0.
     new dbb929b  gnu: r-hitc: Update to 1.36.0.
     new 370d020  gnu: r-beachmat: Update to 2.8.0.
     new a92a277  gnu: r-cner: Update to 1.28.0.
     new 0b6b42b  gnu: r-tfbstools: Update to 1.30.0.
     new 56a2dcf  gnu: r-motifmatchr: Update to 1.14.0.
     new 71e3929  gnu: r-chromvar: Update to 1.14.0.
     new b21a73c  gnu: r-singlecellexperiment: Update to 1.14.1.
     new 851894f  gnu: r-scuttle: Update to 1.2.0.
     new d9755a2  gnu: r-scater: Update to 1.20.0.
     new 015ba64  gnu: r-scran: Update to 1.20.1.
     new 360477c  gnu: r-sparsematrixstats: Update to 1.4.0.
     new 47e291d  gnu: r-delayedmatrixstats: Update to 1.14.0.
     new aaf0958  gnu: r-mscoreutils: Update to 1.4.0.
     new b5a3877  gnu: r-biocio: Update to 1.2.0.
     new e501608  gnu: r-msmseda: Update to 1.30.0.
     new 2fe8673  gnu: r-msmstests: Update to 1.30.0.
     new 8ad54dc  gnu: r-catalyst: Update to 1.16.0.
     new bd6d000  gnu: r-erma: Update to 1.8.0.
     new 46b7d19  gnu: r-ggbio: Update to 1.40.0.
     new bdfa117  gnu: r-gviz: Update to 1.36.0.
     new a06d13b  gnu: r-gwascat: Update to 2.24.0.
     new 2860208  gnu: r-kegggraph: Update to 1.52.0.
     new b4cea45  gnu: r-ldblock: Update to 1.22.0.
     new 8fa5a4d  gnu: r-pathview: Update to 1.32.0.
     new 3e2052e  gnu: r-snpstats: Update to 1.42.0.
     new 3a5642d  gnu: r-chromstar: Update to 1.18.0.
     new abe7628  gnu: r-guitar: Update to 2.8.0.
     new 8f12002  gnu: r-sushi: Update to 1.30.0.

The 324 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "add" were already present in the repository and have only
been added to this reference.


Summary of changes:
 gnu/packages/bioconductor.scm   | 1708 +++++++++++++++++++++------------------
 gnu/packages/bioinformatics.scm |   12 +-
 gnu/packages/cran.scm           |  110 +++
 guix/build-system/r.scm         |    2 +-
 guix/import/cran.scm            |    4 +-
 5 files changed, 1042 insertions(+), 794 deletions(-)