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09/324: gnu: Add r-scaledmatrix.
From: |
guix-commits |
Subject: |
09/324: gnu: Add r-scaledmatrix. |
Date: |
Sat, 5 Jun 2021 03:14:26 -0400 (EDT) |
rekado pushed a commit to branch master
in repository guix.
commit fd4fa40ac4cf342e737a95766e7ca28de64f2294
Author: Ricardo Wurmus <rekado@elephly.net>
AuthorDate: Sat Jun 5 01:47:24 2021 +0200
gnu: Add r-scaledmatrix.
* gnu/packages/bioconductor.scm (r-scaledmatrix): New variable.
---
gnu/packages/bioconductor.scm | 28 ++++++++++++++++++++++++++++
1 file changed, 28 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index dab37d5..0302c74 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -5647,6 +5647,34 @@ to search for all neighbors within a given distance.
Parallelization is
achieved for all methods using the BiocParallel framework.")
(license license:gpl3)))
+(define-public r-scaledmatrix
+ (package
+ (name "r-scaledmatrix")
+ (version "1.0.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "ScaledMatrix" version))
+ (sha256
+ (base32
+ "1j96fvw1waqxbv5c8myfmhsidq370z03yz13yqmrs4nn1rpn1a06"))))
+ (properties `((upstream-name . "ScaledMatrix")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-delayedarray" ,r-delayedarray)
+ ("r-matrix" ,r-matrix)
+ ("r-s4vectors" ,r-s4vectors)))
+ (native-inputs `(("r-knitr" ,r-knitr)))
+ (home-page "https://github.com/LTLA/ScaledMatrix")
+ (synopsis "Create a DelayedMatrix of scaled and centered values")
+ (description
+ "This package provides delayed computation of a matrix of scaled and
+centered values. The result is equivalent to using the @code{scale} function
+but avoids explicit realization of a dense matrix during block processing.
+This permits greater efficiency in common operations, most notably matrix
+multiplication.")
+ (license license:gpl3)))
+
(define-public r-biocsingular
(package
(name "r-biocsingular")
- branch master updated (7382aa0 -> 8f12002), guix-commits, 2021/06/05
- 01/324: gnu: pigx-rnaseq: Update to 0.0.13., guix-commits, 2021/06/05
- 02/324: guix: Update to Bioconductor 3.13., guix-commits, 2021/06/05
- 04/324: gnu: Add r-ggnewscale., guix-commits, 2021/06/05
- 03/324: gnu: Add r-aplot., guix-commits, 2021/06/05
- 09/324: gnu: Add r-scaledmatrix.,
guix-commits <=
- 05/324: gnu: Add r-ggpointdensity., guix-commits, 2021/06/05
- 10/324: gnu: Add r-treeio., guix-commits, 2021/06/05
- 11/324: gnu: Add r-ggtree., guix-commits, 2021/06/05
- 06/324: gnu: Add r-arrow., guix-commits, 2021/06/05
- 18/324: gnu: r-cytolib: Update to 2.4.0., guix-commits, 2021/06/05
- 16/324: gnu: r-mzr: Update to 2.26.0., guix-commits, 2021/06/05
- 19/324: gnu: r-ncdfflow: Update to 2.38.0., guix-commits, 2021/06/05
- 23/324: gnu: r-aneufinder: Update to 1.20.0., guix-commits, 2021/06/05
- 15/324: gnu: r-msnid: Update to 1.26.0., guix-commits, 2021/06/05
- 21/324: gnu: r-cytoml: Update to 2.4.0., guix-commits, 2021/06/05