01/324: gnu: pigx-rnaseq: Update to 0.0.13.

[guix-commits]

rekado pushed a commit to branch master
in repository guix.

commit f98837a6baca957098d073d5bb8d440ddf9ffefb
Author: Ricardo Wurmus <rekado@elephly.net>
AuthorDate: Sat Jun 5 00:33:00 2021 +0200

    gnu: pigx-rnaseq: Update to 0.0.13.
    
    * gnu/packages/bioinformatics.scm (pigx-rnaseq): Update to 0.0.13.
    [arguments]: Remove obsolete substitutions.
    [inputs]: Remove fastqc and trim-galore; add hisat2 and fastp.
---
 gnu/packages/bioinformatics.scm | 12 +++++-------
 1 file changed, 5 insertions(+), 7 deletions(-)

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index c1cfabc..dab0973 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -10355,7 +10355,7 @@ once.  This package provides tools to perform Drop-seq 
analyses.")
 (define-public pigx-rnaseq
   (package
     (name "pigx-rnaseq")
-    (version "0.0.10")
+    (version "0.0.13")
     (source (origin
               (method url-fetch)
               (uri (string-append 
"https://github.com/BIMSBbioinfo/pigx_rnaseq/";
@@ -10363,7 +10363,7 @@ once.  This package provides tools to perform Drop-seq 
analyses.")
                                   "/pigx_rnaseq-" version ".tar.gz"))
               (sha256
                (base32
-                "0z3hr120wk2vrlmlpz1vp3n9wy3rq4y2mnzh2vf08qgqn2xfdwcw"))))
+                "0z9zid2c8q16lfzlnjd63nparknhv31qgv4h79algmvhkakm2pgk"))))
     (build-system gnu-build-system)
     (arguments
      `(#:parallel-tests? #f             ; not supported
@@ -10373,19 +10373,17 @@ once.  This package provides tools to perform 
Drop-seq analyses.")
          (add-after 'unpack 'disable-resource-intensive-test
            (lambda _
              (substitute* "Makefile.in"
-               (("(^  tests/test_trim_galore/test.sh).*" _ m) m)
                (("^  tests/test_multiqc/test.sh") "")
-               (("^  test.sh") ""))
-             #t)))))
+               (("^  test.sh") "")))))))
     (inputs
      `(("coreutils" ,coreutils)
        ("sed" ,sed)
        ("gzip" ,gzip)
        ("snakemake" ,snakemake)
-       ("fastqc" ,fastqc)
        ("multiqc" ,multiqc)
        ("star" ,star-for-pigx)
-       ("trim-galore" ,trim-galore)
+       ("hisat2" ,hisat2)
+       ("fastp" ,fastp)
        ("htseq" ,htseq)
        ("samtools" ,samtools)
        ("r-minimal" ,r-minimal)