[Date Prev][Date Next][Thread Prev][Thread Next][Date Index][Thread Index]
16/324: gnu: r-mzr: Update to 2.26.0.
From: |
guix-commits |
Subject: |
16/324: gnu: r-mzr: Update to 2.26.0. |
Date: |
Sat, 5 Jun 2021 03:14:28 -0400 (EDT) |
rekado pushed a commit to branch master
in repository guix.
commit 87d06a725f9bebd117dd9f88efe1a4a53275ac1f
Author: Ricardo Wurmus <rekado@elephly.net>
AuthorDate: Sat Jun 5 01:39:56 2021 +0200
gnu: r-mzr: Update to 2.26.0.
* gnu/packages/bioconductor.scm (r-mzr): Update to 2.26.0.
[arguments]: Remove obsolute substitution.
---
gnu/packages/bioconductor.scm | 10 +++-------
1 file changed, 3 insertions(+), 7 deletions(-)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index f87a8d3..6f466ca 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -3563,14 +3563,14 @@ specific parser.")
(define-public r-mzr
(package
(name "r-mzr")
- (version "2.24.1")
+ (version "2.26.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "mzR" version))
(sha256
(base32
- "0ik0yrjhvk8r5pm990chn2aadp0gqzzkkm0027682ky34xp142sg"))
+ "1m5xvnv0rxyrfri4jwyyryr13d55nyhqvfc5xxg5mpskw2v029kp"))
(modules '((guix build utils)))
(snippet
'(begin
@@ -3585,10 +3585,6 @@ specific parser.")
(lambda _
(substitute* "src/Makevars"
(("\\./boost/libs.*") "")
- ;; This is to avoid having a plain directory on the list of
- ;; libraries to link.
- (("\\(RHDF5_LIBS\\)" match)
- (string-append match "/libhdf5.a"))
(("PKG_LIBS=") "PKG_LIBS=$(BOOST_LIBS) ")
(("\\ARCH_OBJS=" line)
(string-append line
@@ -3597,7 +3593,7 @@ specific parser.")
#t)))))
(inputs
`(;; Our default boost package won't work here, unfortunately, even with
- ;; mzR version 2.24.1.
+ ;; mzR version 2.26.0.
("boost" ,boost-for-mysql) ; use this instead of the bundled boost
sources
("zlib" ,zlib)))
(propagated-inputs
- 01/324: gnu: pigx-rnaseq: Update to 0.0.13., (continued)
- 01/324: gnu: pigx-rnaseq: Update to 0.0.13., guix-commits, 2021/06/05
- 02/324: guix: Update to Bioconductor 3.13., guix-commits, 2021/06/05
- 04/324: gnu: Add r-ggnewscale., guix-commits, 2021/06/05
- 03/324: gnu: Add r-aplot., guix-commits, 2021/06/05
- 09/324: gnu: Add r-scaledmatrix., guix-commits, 2021/06/05
- 05/324: gnu: Add r-ggpointdensity., guix-commits, 2021/06/05
- 10/324: gnu: Add r-treeio., guix-commits, 2021/06/05
- 11/324: gnu: Add r-ggtree., guix-commits, 2021/06/05
- 06/324: gnu: Add r-arrow., guix-commits, 2021/06/05
- 18/324: gnu: r-cytolib: Update to 2.4.0., guix-commits, 2021/06/05
- 16/324: gnu: r-mzr: Update to 2.26.0.,
guix-commits <=
- 19/324: gnu: r-ncdfflow: Update to 2.38.0., guix-commits, 2021/06/05
- 23/324: gnu: r-aneufinder: Update to 1.20.0., guix-commits, 2021/06/05
- 15/324: gnu: r-msnid: Update to 1.26.0., guix-commits, 2021/06/05
- 21/324: gnu: r-cytoml: Update to 2.4.0., guix-commits, 2021/06/05
- 24/324: gnu: r-biocversion: Update to 3.13.1., guix-commits, 2021/06/05
- 25/324: gnu: r-biocgenerics: Update to 0.38.0., guix-commits, 2021/06/05
- 13/324: gnu: r-rhdf5lib: Update to 1.14.0., guix-commits, 2021/06/05
- 14/324: gnu: r-bioccheck: Update to 1.28.0., guix-commits, 2021/06/05
- 17/324: gnu: r-rhdf5: Update to 2.36.0., guix-commits, 2021/06/05
- 20/324: gnu: r-flowworkspace: Update to 4.4.0., guix-commits, 2021/06/05