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05/29: gnu: r-bsgenome-hsapiens-1000genomes-hs37d5: Use bioconductor-uri


From: guix-commits
Subject: 05/29: gnu: r-bsgenome-hsapiens-1000genomes-hs37d5: Use bioconductor-uri.
Date: Wed, 4 Dec 2019 03:46:43 -0500 (EST)

rekado pushed a commit to branch master
in repository guix.

commit 88e7c7db59c28186bdce46ad65e9a5f4f81f27b0
Author: Ricardo Wurmus <address@hidden>
Date:   Wed Dec 4 09:28:04 2019 +0100

    gnu: r-bsgenome-hsapiens-1000genomes-hs37d5: Use bioconductor-uri.
    
    * gnu/packages/bioconductor.scm 
(r-bsgenome-hsapiens-1000genomes-hs37d5)[source]:
    Use bioconductor-uri.
    [arguments]: Enable substitution.
---
 gnu/packages/bioconductor.scm | 11 ++---------
 1 file changed, 2 insertions(+), 9 deletions(-)

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 9e7078c..dd6b038 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -182,21 +182,14 @@ Finder (TRF mask).  Only the AGAPS and AMB masks are 
\"active\" by default.")
     (version "0.99.1")
     (source (origin
               (method url-fetch)
-              ;; We cannot use bioconductor-uri here because this tarball is
-              ;; located under "data/annotation/" instead of "bioc/".
-              (uri (string-append "https://www.bioconductor.org/packages/";
-                                  "release/data/annotation/src/contrib/"
-                                  "BSgenome.Hsapiens.1000genomes.hs37d5_"
-                                  version ".tar.gz"))
+              (uri (bioconductor-uri "BSgenome.Hsapiens.1000genomes.hs37d5"
+                                     version 'annotation))
               (sha256
                (base32
                 "1cg0g5fqmsvwyw2p9hp2yy4ilk21jkbbrnpgqvb5c36ihjwvc7sr"))))
     (properties
      `((upstream-name . "BSgenome.Hsapiens.1000genomes.hs37d5")))
     (build-system r-build-system)
-    ;; As this package provides little more than a very large data file it
-    ;; doesn't make sense to build substitutes.
-    (arguments `(#:substitutable? #f))
     (propagated-inputs
      `(("r-bsgenome" ,r-bsgenome)))
     (home-page



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