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05/29: gnu: r-bsgenome-hsapiens-1000genomes-hs37d5: Use bioconductor-uri
From: |
guix-commits |
Subject: |
05/29: gnu: r-bsgenome-hsapiens-1000genomes-hs37d5: Use bioconductor-uri. |
Date: |
Wed, 4 Dec 2019 03:46:43 -0500 (EST) |
rekado pushed a commit to branch master
in repository guix.
commit 88e7c7db59c28186bdce46ad65e9a5f4f81f27b0
Author: Ricardo Wurmus <address@hidden>
Date: Wed Dec 4 09:28:04 2019 +0100
gnu: r-bsgenome-hsapiens-1000genomes-hs37d5: Use bioconductor-uri.
* gnu/packages/bioconductor.scm
(r-bsgenome-hsapiens-1000genomes-hs37d5)[source]:
Use bioconductor-uri.
[arguments]: Enable substitution.
---
gnu/packages/bioconductor.scm | 11 ++---------
1 file changed, 2 insertions(+), 9 deletions(-)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 9e7078c..dd6b038 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -182,21 +182,14 @@ Finder (TRF mask). Only the AGAPS and AMB masks are
\"active\" by default.")
(version "0.99.1")
(source (origin
(method url-fetch)
- ;; We cannot use bioconductor-uri here because this tarball is
- ;; located under "data/annotation/" instead of "bioc/".
- (uri (string-append "https://www.bioconductor.org/packages/"
- "release/data/annotation/src/contrib/"
- "BSgenome.Hsapiens.1000genomes.hs37d5_"
- version ".tar.gz"))
+ (uri (bioconductor-uri "BSgenome.Hsapiens.1000genomes.hs37d5"
+ version 'annotation))
(sha256
(base32
"1cg0g5fqmsvwyw2p9hp2yy4ilk21jkbbrnpgqvb5c36ihjwvc7sr"))))
(properties
`((upstream-name . "BSgenome.Hsapiens.1000genomes.hs37d5")))
(build-system r-build-system)
- ;; As this package provides little more than a very large data file it
- ;; doesn't make sense to build substitutes.
- (arguments `(#:substitutable? #f))
(propagated-inputs
`(("r-bsgenome" ,r-bsgenome)))
(home-page
- branch master updated (19e67f8 -> e21b668), guix-commits, 2019/12/04
- 02/29: gnu: r-bsgenome-dmelanogaster-ucsc-dm6: Use bioconductor-uri., guix-commits, 2019/12/04
- 10/29: gnu: r-org-ce-eg-db: Use bioconductor-uri., guix-commits, 2019/12/04
- 04/29: gnu: r-bsgenome-dmelanogaster-ucsc-dm3-masked: Use bioconductor-uri., guix-commits, 2019/12/04
- 11/29: gnu: r-org-dm-eg-db: Use bioconductor-uri., guix-commits, 2019/12/04
- 24/29: gnu: r-abadata: Use bioconductor-uri., guix-commits, 2019/12/04
- 19/29: gnu: r-txdb-mmusculus-ucsc-mm9-knowngene: Use bioconductor-uri., guix-commits, 2019/12/04
- 13/29: gnu: r-org-hs-eg-db: Use bioconductor-uri., guix-commits, 2019/12/04
- 12/29: gnu: r-org-dr-eg-db: Use bioconductor-uri., guix-commits, 2019/12/04
- 05/29: gnu: r-bsgenome-hsapiens-1000genomes-hs37d5: Use bioconductor-uri.,
guix-commits <=
- 09/29: gnu: r-bsgenome-mmusculus-ucsc-mm10: Use bioconductor-uri., guix-commits, 2019/12/04
- 17/29: gnu: r-txdb-hsapiens-ucsc-hg19-knowngene: Use bioconductor-uri., guix-commits, 2019/12/04
- 23/29: gnu: r-do-db: Use bioconductor-uri., guix-commits, 2019/12/04
- 14/29: gnu: r-org-mm-eg-db: Use bioconductor-uri., guix-commits, 2019/12/04
- 08/29: gnu: r-bsgenome-mmusculus-ucsc-mm9-masked: Use bioconductor-uri., guix-commits, 2019/12/04
- 07/29: gnu: r-bsgenome-mmusculus-ucsc-mm9: Use bioconductor-uri., guix-commits, 2019/12/04
- 27/29: gnu: r-all: Use bioconductor-uri., guix-commits, 2019/12/04
- 16/29: gnu: r-genelendatabase: Use bioconductor-uri., guix-commits, 2019/12/04
- 29/29: gnu: r-rversions: Update to 2.0.1., guix-commits, 2019/12/04
- 03/29: gnu: r-bsgenome-dmelanogaster-ucsc-dm3: Use bioconductor-uri., guix-commits, 2019/12/04