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09/29: gnu: r-bsgenome-mmusculus-ucsc-mm10: Use bioconductor-uri.
From: |
guix-commits |
Subject: |
09/29: gnu: r-bsgenome-mmusculus-ucsc-mm10: Use bioconductor-uri. |
Date: |
Wed, 4 Dec 2019 03:46:44 -0500 (EST) |
rekado pushed a commit to branch master
in repository guix.
commit f83404bc5b2703ff7b4c9987e1eed48646454a1e
Author: Ricardo Wurmus <address@hidden>
Date: Wed Dec 4 09:29:56 2019 +0100
gnu: r-bsgenome-mmusculus-ucsc-mm10: Use bioconductor-uri.
* gnu/packages/bioconductor.scm (r-bsgenome-mmusculus-ucsc-mm10)[source]:
Use bioconductor-uri.
[arguments]: Enable substitution.
---
gnu/packages/bioconductor.scm | 11 ++---------
1 file changed, 2 insertions(+), 9 deletions(-)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 99856b1..ef5df8e 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -292,21 +292,14 @@ default." )
(version "1.4.0")
(source (origin
(method url-fetch)
- ;; We cannot use bioconductor-uri here because this tarball is
- ;; located under "data/annotation/" instead of "bioc/".
- (uri (string-append "https://www.bioconductor.org/packages/"
- "release/data/annotation/src/contrib/"
- "BSgenome.Mmusculus.UCSC.mm10_"
- version ".tar.gz"))
+ (uri (bioconductor-uri "BSgenome.Mmusculus.UCSC.mm10"
+ version 'annotation))
(sha256
(base32
"12s0nm2na9brjad4rn9l7d3db2aj8qa1xvz0y1k7gk08wayb6bkf"))))
(properties
`((upstream-name . "BSgenome.Mmusculus.UCSC.mm10")))
(build-system r-build-system)
- ;; As this package provides little more than a very large data file it
- ;; doesn't make sense to build substitutes.
- (arguments `(#:substitutable? #f))
(propagated-inputs
`(("r-bsgenome" ,r-bsgenome)))
(home-page
- branch master updated (19e67f8 -> e21b668), guix-commits, 2019/12/04
- 02/29: gnu: r-bsgenome-dmelanogaster-ucsc-dm6: Use bioconductor-uri., guix-commits, 2019/12/04
- 10/29: gnu: r-org-ce-eg-db: Use bioconductor-uri., guix-commits, 2019/12/04
- 04/29: gnu: r-bsgenome-dmelanogaster-ucsc-dm3-masked: Use bioconductor-uri., guix-commits, 2019/12/04
- 11/29: gnu: r-org-dm-eg-db: Use bioconductor-uri., guix-commits, 2019/12/04
- 24/29: gnu: r-abadata: Use bioconductor-uri., guix-commits, 2019/12/04
- 19/29: gnu: r-txdb-mmusculus-ucsc-mm9-knowngene: Use bioconductor-uri., guix-commits, 2019/12/04
- 13/29: gnu: r-org-hs-eg-db: Use bioconductor-uri., guix-commits, 2019/12/04
- 12/29: gnu: r-org-dr-eg-db: Use bioconductor-uri., guix-commits, 2019/12/04
- 05/29: gnu: r-bsgenome-hsapiens-1000genomes-hs37d5: Use bioconductor-uri., guix-commits, 2019/12/04
- 09/29: gnu: r-bsgenome-mmusculus-ucsc-mm10: Use bioconductor-uri.,
guix-commits <=
- 17/29: gnu: r-txdb-hsapiens-ucsc-hg19-knowngene: Use bioconductor-uri., guix-commits, 2019/12/04
- 23/29: gnu: r-do-db: Use bioconductor-uri., guix-commits, 2019/12/04
- 14/29: gnu: r-org-mm-eg-db: Use bioconductor-uri., guix-commits, 2019/12/04
- 08/29: gnu: r-bsgenome-mmusculus-ucsc-mm9-masked: Use bioconductor-uri., guix-commits, 2019/12/04
- 07/29: gnu: r-bsgenome-mmusculus-ucsc-mm9: Use bioconductor-uri., guix-commits, 2019/12/04
- 27/29: gnu: r-all: Use bioconductor-uri., guix-commits, 2019/12/04
- 16/29: gnu: r-genelendatabase: Use bioconductor-uri., guix-commits, 2019/12/04
- 29/29: gnu: r-rversions: Update to 2.0.1., guix-commits, 2019/12/04
- 03/29: gnu: r-bsgenome-dmelanogaster-ucsc-dm3: Use bioconductor-uri., guix-commits, 2019/12/04
- 28/29: gnu: r-survival: Update to 3.1-8., guix-commits, 2019/12/04